NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163179_10006184

Scaffold Ga0163179_10006184


Overview

Basic Information
Taxon OID3300012953 Open in IMG/M
Scaffold IDGa0163179_10006184 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7916
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (35.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean
CoordinatesLat. (o)34.876Long. (o)-13.1352Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008914Metagenome326Y
F009992Metagenome / Metatranscriptome310Y
F036420Metagenome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0163179_1000618412F008914AGGAGMNNPHSPFTQQLEDQQKQAIENTRQWIKGWDADQREMVLWILEEEVRHDKLMNFEHEDGGKTKSEKIN*
Ga0163179_1000618417F036420GAGMEIKLHARNIDTRLRVALYAMTEFAMAKLVPSNRLRKNISLNIHLKHHSESGEAMMSEYANPKRPREFKVIIDHHRAEVDDYGRERDATEWAH
Ga0163179_100061849F009992N/ALKLNEKKKMDNVGYVLGNGPSRDRERKQQYDGVTYGCNSIYKEMAVDVLVSMDAWYQFEVIASGYPEKNECLFGGYNPIPIGVPPETLNPPNYELYEYNPEDRKRAADWYYYATSAADYEKAKTENYALPYWKPDCGYICWVSESYKIKEVDYGVIPIGKIRPPSGAYALQEALKAGHDRVEVFGFDSLAGVFSTSSQLAFKEHDTDNDTIQNRMDEWTTFYKTVTEHYNEIEIVWHTKSDDN*
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