NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163179_10023293

Scaffold Ga0163179_10023293


Overview

Basic Information
Taxon OID3300012953 Open in IMG/M
Scaffold IDGa0163179_10023293 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4126
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean
CoordinatesLat. (o)34.876Long. (o)-13.1352Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020386Metagenome / Metatranscriptome224Y
F049301Metagenome / Metatranscriptome147N

Sequences

Protein IDFamilyRBSSequence
Ga0163179_100232934F049301AGGAGGMPIVTNNNNLGTAIANLYTGHGVPTKFFTVVVKDSSATAMDLRAHDDSSGNFHKDGLVDRVLQIAQTRGTIVYFNVKNDNSGTITIGMEGEFGTATNLATAYDNSDGSNNLSVKYRNTASSTTEDGVADIAGTTVTADTLV*
Ga0163179_100232935F020386GGAGGMPIARNNFASLATAAEFEGVDVSFLTVDFINSVAAETGDPQANSTVAGLALVRHALENLGFNIIGNGALAVSSTEMTYMVRTDSVDATLLATGSDNTIRDAIRAVDTAGRAASATPRNTANFSAATVTIQSAGMSDTGVNA*
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