NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163179_10025941

Scaffold Ga0163179_10025941


Overview

Basic Information
Taxon OID3300012953 Open in IMG/M
Scaffold IDGa0163179_10025941 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3919
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean
CoordinatesLat. (o)34.876Long. (o)-13.1352Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092188Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0163179_100259414F092188AGGTGGMQWYHKDKDPRMDERSARLHARMIKKHLEAQFYHDDVNVARASTYVTWDYGKKKWCEVDHLMFHVLTVAQPTDTRQQLEDRVCGDVAKYLKNFSLYKSAKIYVTTMDMEHPEWDYGKDKGQPKYYQTTLHIQECNATDLAIRGHDHDYFDLGGENLLEVA*

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