NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163111_10025034

Scaffold Ga0163111_10025034


Overview

Basic Information
Taxon OID3300012954 Open in IMG/M
Scaffold IDGa0163111_10025034 Open in IMG/M
Source Dataset NameMarine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4393
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location
Location NameCosta Rica: the Eastern Pacific
CoordinatesLat. (o)0.8736Long. (o)-97.0511Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000302Metagenome / Metatranscriptome1337Y
F004368Metagenome / Metatranscriptome441Y
F054087Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0163111_1002503415F000302AGGAGMIKTMSADTKLRIADLERQKIDLEDRLEYVGSNLVRMHQLEQEIYEIEDTIAKLTG*
Ga0163111_100250347F004368AGGAGGMGIPGLTGTRLADIIFDRHEDFLYEDSRAMKLTPYVMSERCLQVEMSNIYKDYKSGDYDTLTFILEGGFKGFHNMDSSELIEEYKAIEEQWYNLYECSEFEFTPYEEDPIHKLEEEKI*
Ga0163111_100250348F054087AGGAGGMPKFRLFADVDSVVEEAEHLESIFENGIEAESEDEALKIVNKKVKELMYGGPYYTVTDEEDE*
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