Scaffold Ga0163111_10245535

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0163111_10245535

Scaffold Ga0163111_10245535

Overview

Basic Information
Taxon OID	3300012954 Open in IMG/M
Scaffold ID	Ga0163111_10245535 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1567
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location
Location Name	Costa Rica: the Eastern Pacific
Coordinates	Lat. (^o)	0.8736	Long. (^o)	-97.0511	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022458	Metagenome / Metatranscriptome	214	Y
F030151	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163111_102455352	F022458	N/A	MIDDWLNQNPDDGFDPNDHDIEMDEIAKLHAMADMKEDQEIWAREQANKFYNDFDSLNISDAILAVGSLIRNKALNLKQVNTMLDNMIEVFKMDEEYEKCHVCNEIKKGLNAKF*
Ga0163111_102455353	F030151	AGG	MLNFNAENIEDLEEEARERALEVSVEVTTAVIKALEAGTDKVIIGILSSLDMDLSVDKANYLEALETNLSRCAEAEEFELCDAASKWIKKLRE*

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