NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164298_10378398

Scaffold Ga0164298_10378398


Overview

Basic Information
Taxon OID3300012955 Open in IMG/M
Scaffold IDGa0164298_10378398 Open in IMG/M
Source Dataset NameUnamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)907
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Mt. Pleasant research farm, Cornell University, New York
CoordinatesLat. (o)42.4531Long. (o)-76.3842Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004492Metagenome436Y
F070514Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0164298_103783981F070514N/AMKCPACFSEIDDRSYRCKECHRIASYRRFCWRYRYFVLVIVALIGYWTIPGLVRRWFALDYNKLPHGALVSDQMTLSWL
Ga0164298_103783982F004492N/ARLVTLRYGDIGGSDEDARETKNGVKDPAYAHGIVVKLGSQDGFAFFDHFEELLFDRVGVPPKNLAANLEQIRQNTHDRIEDTIFEMNKFVVDKNPMVGLAWKDISDAVQAKFKNVPEPARTKQIEDLTKQTYYVYIFLSLYARMDSLRSRGILSPNDDMIVTWKRSWLPNLMRSELGRWMLDNNLMEYYSETMIKDLRDAAAEPAPSSPTPQARPQMGTH*
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