Scaffold Ga0164303_10039511

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0164303_10039511

Scaffold Ga0164303_10039511

Overview

Basic Information
Taxon OID	3300012957 Open in IMG/M
Scaffold ID	Ga0164303_10039511 Open in IMG/M
Source Dataset Name	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2011
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Mt. Pleasant research farm, Cornell University, New York
Coordinates	Lat. (^o)	42.4531	Long. (^o)	-76.3842	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003938	Metagenome / Metatranscriptome	461	Y
F020745	Metagenome / Metatranscriptome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164303_100395111	F020745	GGCGG	MSSPPTSDTGTRSAVDTGAVPSPLPRSPSDSWLRIGAQVFLRFPLPGQPGHGRTAFVRRRPVRIVDGRMEGGYTDAYELICPSCGDNPYLDFGDVPAQLQRLRGSYVLTAAVAAYEEHLGLSSCPDEDSPSGPGPRDAKNGVPRTEAANGDSPSDSVSASTTL*
Ga0164303_100395113	F003938	N/A	VRGWYDGSGWFVGAAVVLVVFALLALLVGLQSSDRVLWTGQQVVGTEQQGIVTYWWHGQSYSLDEPGFRSARAVSVYLDPADPSNAMVDSVLDRTVAAVLILGPVVAAVVLLVLGGTRNYRWFRQKLKLLFRELNV*

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