Scaffold Ga0164303_10043888

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0164303_10043888

Scaffold Ga0164303_10043888

Overview

Basic Information
Taxon OID	3300012957 Open in IMG/M
Scaffold ID	Ga0164303_10043888 Open in IMG/M
Source Dataset Name	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1937
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Mt. Pleasant research farm, Cornell University, New York
Coordinates	Lat. (^o)	42.4531	Long. (^o)	-76.3842	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F090940	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164303_100438881	F090940	GAG	MTAPDVSRPMMRSLPIVSALLGCALQTLAQSDTPTFKAEAKSALVWDADFPGSGHSFIVWDPLTGHEIHKLSSAGIEVSSRVGYERVSPSEAGELLNYTTTIANNTDSEITVQYGGASADGRAALPLWLARTSKDAKKGDRKNIWELGRMRCFKNGFASSENFFSANAPSRIFVVHAQTAVTISSVSKDPRPYSIRCSLDGCHVTGTVRYYITVNKKDYVFVWSGRSVIYCGE*

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