NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164302_10254350

Scaffold Ga0164302_10254350


Overview

Basic Information
Taxon OID3300012961 Open in IMG/M
Scaffold IDGa0164302_10254350 Open in IMG/M
Source Dataset NameSoil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1118
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Mt. Pleasant research farm, Cornell University, New York
CoordinatesLat. (o)42.4531Long. (o)-76.3842Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020244Metagenome / Metatranscriptome225Y
F046611Metagenome / Metatranscriptome151N

Sequences

Protein IDFamilyRBSSequence
Ga0164302_102543502F046611GGAMAITSDVRNKAYQKDDHHSATPKSAAMTMTSASPSLGADGVQFTPEVIEEIKDLVAQGISRDEIASRLGVSVGYLQVTCLRLGISLRRIILPNGSGRHTADVMIAHVREQKEVPQPTAPATPLAPTTAVPTAPGVIEVAFTTGTRLRICGPVDASTLAAVMQALTDSQGERKIDEAVPSGTPPSP*
Ga0164302_102543503F020244AGGCGGMFGSRPADRGQIMKKLTRAQLFAPGQRGPRKTKDWFERAKLVIAAARERAVETTQQRAVPSMKRPPTVVHRRRLAERLSANS*
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