Scaffold Ga0153916_13088630

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153916_13088630

Scaffold Ga0153916_13088630

Overview

Basic Information
Taxon OID	3300012964 Open in IMG/M
Scaffold ID	Ga0153916_13088630 Open in IMG/M
Source Dataset Name	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	524
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands → Freshwater Wetland Microbial Communities From Ohio, Usa, Analyzing The Effect Of Biotic And Abiotic Controls

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie, Old Woman Creek
Coordinates	Lat. (^o)	41.3778	Long. (^o)	-82.5108	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008193	Metagenome / Metatranscriptome	337	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153916_130886301	F008193	N/A	TGAAFAGNGPAKMRYSFLGQLTATPANGGVSITVEGGNRAALRAMLGQPVTQTFAYGAGTEFLKWANGVPAIVQAGDLSTGDYVWVHVRAARGASLAEIEQQQAGIVGDHGATLNTPDKPLWLFRGTLTSATSSAVTVHVTGGDRRAMRLLIGQSADQTFTVGGATIFLPRQGT

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