NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0129338_1107402

Scaffold Ga0129338_1107402


Overview

Basic Information
Taxon OID3300012970 Open in IMG/M
Scaffold IDGa0129338_1107402 Open in IMG/M
Source Dataset NameFreshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_RNA2 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)960
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)39.2637Long. (o)-76.0017Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033006Metagenome / Metatranscriptome178Y
F068608Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0129338_11074021F068608N/ASGKFVAEKAAKAAQLRPSGFTQGMNTAISQQISEGGNVASTANAANPASKLPSGAGIADLLGAIDPLDSEPQEFRPITDGIDGYSGRGSEVIPRSLNPNNRQIENVDLIKRYLPDLLNAARIPGAPDSYKRMINSLMREIM*
Ga0129338_11074022F033006GAGMRWVENTFFDHLDKFGNSLGYENFGIAFMLSMVPWETPKDRDNFIREITGQDVKGGEPSNFNPDYLEF*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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