NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126369_11198066

Scaffold Ga0126369_11198066


Overview

Basic Information
Taxon OID3300012971 Open in IMG/M
Scaffold IDGa0126369_11198066 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)849
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046517Metagenome / Metatranscriptome151N
F047849Metagenome / Metatranscriptome149N

Sequences

Protein IDFamilyRBSSequence
Ga0126369_111980661F046517N/AEVVFESIWRDLDAVKVAFGDAWQQSHLPEGYSALMTAYSVHHFLVSESSTAKSFASELRT
Ga0126369_111980662F047849AGGAGMASISAGKRLLTRIETYLAGVFHPFPEERVIAGTIQSFYGWFFPLLRNAVICGALQYFADASGSVTLQILAIIGYIVLAAYCFSYINMWVLTPFHFLKHKRLGSWLDGLVTLAVLLSLGYAIWAGTVFAIDEIARGHAASRSSK*
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