Scaffold Ga0134077_10047384

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134077_10047384

Scaffold Ga0134077_10047384

Overview

Basic Information
Taxon OID	3300012972 Open in IMG/M
Scaffold ID	Ga0134077_10047384 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1577
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: Angelo Coastal Reserve, California
Coordinates	Lat. (^o)	39.7181	Long. (^o)	-123.6527	Alt. (m)		Depth (m)	.4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020655	Metagenome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134077_100473842	F020655	GGA	MRAAVLVLVGALLVLVLGLSAPGVRAAGPTLTIISPADHAVIGNGTPVAVIFVVSDFNLTPPGTGGPSPTEGHVDVYVDGLLTMATSRETIELPLASGTYAILLRLVADNGTSLNPDVTSSISVTVTQGPAVGTPRIEISYVEIIYPTPGLVLGRDVTISFRVTDFALVPPGRGEPVPNEGHVAVFLDDVYVMAVTAFRPIPFSDLVDGKHTVTVQLVDDAGRPLTPDASDSVTFQIQFAAIVDINPYLQIAQIILAVAIVFVLFYRGWGRNLLATLSGRVRRKNA*

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