NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134077_10096700

Scaffold Ga0134077_10096700


Overview

Basic Information
Taxon OID3300012972 Open in IMG/M
Scaffold IDGa0134077_10096700 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1139
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_2_20CM_2_52_21(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032969Metagenome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0134077_100967001F032969N/AMPSSHRDSYVQRQGAESEKSSRPDPKVVQASSPQLLRCPRCSAMSFRILFRDRDVAGTCTECNLQLRTDRRIGRATREYYADFNLQVGAGDSERVERIFLKMNSVSEAKRVYPVVRRLGYRTKQSSPMLHGRLVMVETTRDRAVALIEKLRERGLQVTLQDNFQSSRPEQALPAALIRKRVIRPTGT*
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