NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134110_10012917

Scaffold Ga0134110_10012917


Overview

Basic Information
Taxon OID3300012975 Open in IMG/M
Scaffold IDGa0134110_10012917 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3188
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034529Metagenome174Y
F073409Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0134110_100129171F034529GGGGGMKLVTLFKKSIKMAPEYVPGKCNIGARGRAIRLATGLGIISLFVALDVLALAPVSAASRLLLFVPFYVGLLAALEGTMSFCVLHATRGTYDLHEPTGTAFGSSGTKMDVGSDEWKKLDR
Ga0134110_100129173F073409AGTAGMVLFIVREPLSYFRPYKSYFVAIYVFFNAFPISQLILVFYPDEFLIRLSAQAFAAAAAIIATLWGLLVTKLYFYPEEFSLRSALANPLRKTNLPYLLYLLPMITLVILAIADTTSIDPSASRVAFYVPDNTYYRAIGFSNLLLAVAATVITTFTVYQFVTLSRLRSQLKDREVRNALRVISSSFAAVAALLLVGYSPSSFGYSLLGLVHLVCVALLVVAVRGFKKPTFLKHSSD*
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