NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134076_10069286

Scaffold Ga0134076_10069286


Overview

Basic Information
Taxon OID3300012976 Open in IMG/M
Scaffold IDGa0134076_10069286 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1361
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015076Metagenome257Y
F019626Metagenome228Y
F042264Metagenome158Y
F048895Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0134076_100692861F019626N/ANRLHERGHRFRRSLGVSVFGCFEFAVLVNRLRTADPSEVARCLRLIESLADALRQTDDGDCVKCLVKLWLFAARIAGEAFPAHSHRYLCLAKSLVPPRPVLWSFTALREEVDGYITSVGGERGRLA*
Ga0134076_100692862F048895AGGLPDESSRVFEVVCKGCSRSLMMVERLRDPEIELVVDHLRACSASEPLGEAPMLGEVMARVRVAAVERA*
Ga0134076_100692865F042264GGAMADYPRLTELQAFVPGVEGITLHDVPGEEHQTEMVIHAAAGVTVRIRLTSDRRIRLADLRRR*
Ga0134076_100692866F015076AGGAGGMAGKGKGAQTTHTAEQWERILRIVNEAYADYLAGMDALRERVVGDVKRKLSEGEVLDRPDLEPSSPQERPA*
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