Scaffold Ga0134076_10234633

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134076_10234633

Scaffold Ga0134076_10234633

Overview

Basic Information
Taxon OID	3300012976 Open in IMG/M
Scaffold ID	Ga0134076_10234633 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	779
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: Angelo Coastal Reserve, California
Coordinates	Lat. (^o)	39.7181	Long. (^o)	-123.6527	Alt. (m)		Depth (m)	.4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003589	Metagenome	478	Y
F091784	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134076_102346331	F091784	GGAGG	MKSFIWVLMLATTLPLVAQEPADTAGAPPNGAEAQQLRKQIRQRWNEHVRSTLGLSDDQTAKLQATEQRFEGQRQPIRARQ
Ga0134076_102346332	F003589	AGGAG	MNDDATLHDDKLQEVARRLGARAAERLDVERTAEAVVARLRTEPRAEVRVLGWIQPAWLRIAAVLLLLVGAGVVALNVRGPQPTTPLPPASAGGELSELSGDELRIVLAALEEPGAERQGVSPQDVGLEDLSALELRALLESLEG*

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