NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134087_10097863

Scaffold Ga0134087_10097863


Overview

Basic Information
Taxon OID3300012977 Open in IMG/M
Scaffold IDGa0134087_10097863 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1225
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002331Metagenome / Metatranscriptome569Y
F036612Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0134087_100978631F036612N/AQWLVWHHDPAARRKAGEAGKRLVQEGRGAAERTTALVRRLVEG*
Ga0134087_100978633F002331N/AWNSPKGGTGLTISGDYAKPNSDYGKGNTWGGRAALGLGTLTVSVGVESWKPDLATKAITSFGGNADFRLIGGSLLPVAVNLQVGAARSDSTATSRPAATRVIGAVGISVPLPTPGFSVEPYFSPGIRYTSVSGGGNTTKFGYVFGANLSFGVLGAHLAYDNEKLAGGGSGGVFGVGLHAGIHLPLGM*
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