NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134087_10591543

Scaffold Ga0134087_10591543


Overview

Basic Information
Taxon OID3300012977 Open in IMG/M
Scaffold IDGa0134087_10591543 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)573
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005598Metagenome / Metatranscriptome395Y
F027580Metagenome / Metatranscriptome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0134087_105915431F005598GGALNISPGQANYWWRKNDPSGALLNNLMFIFIVAPIALVLKSFYTASFVVFSFMVPYGLFVRQLAVRAVRRYLEAHPEECDTF
Ga0134087_105915432F027580N/ASLEHGDKPFSRWKGKLINDPLATIIFNGRVVGVRERDEDGEDVDLLLCEWNIPKPGEKAIHKRAAELASFIRSHLGEVRLQGLDYGPHQMTGIHDLKVFWGKGAQVDIRV*

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