Scaffold Ga0168316_107633

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0168316_107633

Scaffold Ga0168316_107633

Overview

Basic Information
Taxon OID	3300012981 Open in IMG/M
Scaffold ID	Ga0168316_107633 Open in IMG/M
Source Dataset Name	Weathered mine tailings microbial communities from Hibbing, Minnesota, USA - DT8
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Minnesota - Twin Cities
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2072
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_70_13	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Geologic → Mine → Unclassified → Weathered Mine Tailings → Weathered Mine Tailings Microbial Communities From Hibbing, Minnesota, Usa

Source Dataset Sampling Location
Location Name	Hibbing, MN, USA
Coordinates	Lat. (^o)	47.432362	Long. (^o)	-92.940835	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F078896	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0168316_1076332	F078896	AGG	MSVQVDIEYLVNALRAGIGLVPPMLVAIVLLGGPTAGWLLYRFVVQPRTRRLRGKDASAMWVCPSCRSVNELRMARCYRCDALPDEEELELIDAHPTGPIRLTPVGPTLDLGGPSASQPRPISRIERAEEVWVEEETWERLEARRDRAALPDVAAMTEVAEASGGRRVGRPSAPIPVGPGRPPVARPAVARPRRAVVVGPAASPAEDPDGTPAA*

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