NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0168317_1018361

Scaffold Ga0168317_1018361


Overview

Basic Information
Taxon OID3300012982 Open in IMG/M
Scaffold IDGa0168317_1018361 Open in IMG/M
Source Dataset NameWeathered mine tailings microbial communities from Hibbing, Minnesota, USA - DCWfield
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2088
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Geologic → Mine → Unclassified → Weathered Mine Tailings → Weathered Mine Tailings Microbial Communities From Hibbing, Minnesota, Usa

Source Dataset Sampling Location
Location NameHibbing, MN, USA
CoordinatesLat. (o)47.432362Long. (o)-92.940835Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F093390Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0168317_10183613F093390N/AMTPAQFVQAPLQGKLSVSRVFWLYGVLGSLVYGLLEFFIDPGNAFLIRLYTVGAYAYSAYVIVGTYRCAVHCRTAGMARFVRISAIASLILLPVFMYFEFSGALGSELSQLQQLNF*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.