NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0168317_1021757

Scaffold Ga0168317_1021757


Overview

Basic Information
Taxon OID3300012982 Open in IMG/M
Scaffold IDGa0168317_1021757 Open in IMG/M
Source Dataset NameWeathered mine tailings microbial communities from Hibbing, Minnesota, USA - DCWfield
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1861
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Geologic → Mine → Unclassified → Weathered Mine Tailings → Weathered Mine Tailings Microbial Communities From Hibbing, Minnesota, Usa

Source Dataset Sampling Location
Location NameHibbing, MN, USA
CoordinatesLat. (o)47.432362Long. (o)-92.940835Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031137Metagenome / Metatranscriptome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0168317_10217572F031137GGAMDHAQFKAKQTAAVYVADGLDEHTLEDFEMHMMGCRECVDDVESWRAIKLNIPARVRPARAPAVAGRSAQATVGWRMAASLIVGGVLGTAGGWFGHESQAPNLDSTQTTFFNVPAATRSGGECTALRLAPDTKFAVLRVPGVSRDRKLIAANAEKQELPATRYTSRLQPDGSHLVRIETQALDGREVFLEARAPDGFGEPLGCVSGEVISGR*

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