Basic Information | |
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Taxon OID | 3300012984 Open in IMG/M |
Scaffold ID | Ga0164309_10017064 Open in IMG/M |
Source Dataset Name | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3726 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Mt. Pleasant research farm, Cornell University, New York | |||||||
Coordinates | Lat. (o) | 42.4531 | Long. (o) | -76.3842 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F016071 | Metagenome / Metatranscriptome | 250 | Y |
F032749 | Metagenome | 179 | Y |
F057711 | Metagenome / Metatranscriptome | 136 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0164309_100170642 | F016071 | AGGGGG | MPHKKERNLAFGPSALNDLAQAFDTAWLELRAWGIEANTELQIKCIKTKLAQRIIEYATEGEHDVEHLKVFGLQGLPHVCAHRVRLPRHGAR* |
Ga0164309_100170643 | F057711 | GAG | MRIELRVDRNGQTIFRAECDTERGSSFAEFSKSALKEFNQRHPEVSLLDDDVWLKFDSVRCPEAPKTGSP* |
Ga0164309_100170645 | F032749 | GAGG | MTDAWGRLHVEVLEGEIIITLPFTNYTVTYYKPASSPGLLAKNFPTKDDSRAPMTQAEFLERAWKLANDKARAFGWIV* |
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