NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164309_10195848

Scaffold Ga0164309_10195848


Overview

Basic Information
Taxon OID3300012984 Open in IMG/M
Scaffold IDGa0164309_10195848 Open in IMG/M
Source Dataset NameSoil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1386
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Mt. Pleasant research farm, Cornell University, New York
CoordinatesLat. (o)42.4531Long. (o)-76.3842Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031479Metagenome / Metatranscriptome182Y
F081470Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0164309_101958481F081470GAGVQAGCGPTLVFLVWPHGHQVIPSVNFPAITNPHVEVYVGWNTKYPEALYGGYAIGGKPKGLIPVGDVNLHLGCLDYGTPAKATATVPGGVTYSTQTGLRCTLAGTGAFNLVERGGGSRVLILHQGRKILLRADVTPTKASVTVPKGA
Ga0164309_101958482F031479AGGAGGMSDLTVTRAEDGHGRTALILGVASLVLYIGGGFTIGGIFWALGPLLGLGAILLGGGRRLKKKGREATIAVILGAIPVLWTAAFLIVAALS*
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Institute for Fundamental Biomedical Research
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