NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164307_10584929

Scaffold Ga0164307_10584929


Overview

Basic Information
Taxon OID3300012987 Open in IMG/M
Scaffold IDGa0164307_10584929 Open in IMG/M
Source Dataset NameSoil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)858
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Mt. Pleasant research farm, Cornell University, New York
CoordinatesLat. (o)42.4531Long. (o)-76.3842Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000150Metagenome / Metatranscriptome1910Y
F009836Metagenome / Metatranscriptome312Y

Sequences

Protein IDFamilyRBSSequence
Ga0164307_105849292F000150GGCGGMSITPYLDGPEVDPETKRVLSAALEMTRVSLGLIDNFANGIIAKRISEIAETGEWDPDLLCEGAVKKLRGHLFGD*
Ga0164307_105849293F009836N/AMTVNLAYSVVPTTALCPNCESAVAITQVTPILLVDGFEDVTYRCKGCRSEVKRTFKRQSSAWELVTLPLAFHP*

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