NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164306_10000079

Scaffold Ga0164306_10000079


Overview

Basic Information
Taxon OID3300012988 Open in IMG/M
Scaffold IDGa0164306_10000079 Open in IMG/M
Source Dataset NameSoil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34715
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (51.61%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Mt. Pleasant research farm, Cornell University, New York
CoordinatesLat. (o)42.4531Long. (o)-76.3842Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031273Metagenome / Metatranscriptome183Y
F036796Metagenome / Metatranscriptome169Y
F083303Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0164306_1000007920F083303GGCGGMTPVTITRRKMPLDDLVVRVYHLELSECRDFAEFKEGVQLLLQNVDEVLDILGYYQPFERRVARAVDDLKKSAISLKSLCAEIPESFDDPEGWRGIALQVIANYEQFRIEAGLLYQIAVPDATFGVLRAAL*
Ga0164306_1000007922F031273GGAGGMAAQDVTKKLHVYHILYRLNLSFTNIVGHCRALQEAGSLTAKSSKVFQGYVQELQAEINQELLERMHDDELEDWARFGKIRQAEEKRLRDPDDVFLQAAERRKELAGQRQRSATLRKKGERRPKQ*
Ga0164306_1000007925F036796N/AMNKPKDISIAEWEEIIQLPEIRESWGLQDETAEQFADMVFGAKFDFVSGGPGYAGDLYVIHGDALSSEPMTLIRKNGRLEVV*
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