NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164306_10132747

Scaffold Ga0164306_10132747


Overview

Basic Information
Taxon OID3300012988 Open in IMG/M
Scaffold IDGa0164306_10132747 Open in IMG/M
Source Dataset NameSoil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1674
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Mt. Pleasant research farm, Cornell University, New York
CoordinatesLat. (o)42.4531Long. (o)-76.3842Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010734Metagenome / Metatranscriptome300Y
F014564Metagenome / Metatranscriptome262Y

Sequences

Protein IDFamilyRBSSequence
Ga0164306_101327471F010734N/AMKSLVFAVLALFLVGASVAQKHSAPQPQTSQQWRPYVYPDDGFAITLPAPTTPHNDGGDRHIHLYTVRLQGGTIFNLRAVHRLMDCETTLADLWDKADSNKDQKEPVIRGSLKQVELSGLRGLEYETGSSDERNLHRFHCGDKIFYLISAG
Ga0164306_101327472F014564GGAGMTDAVIKETAIREANQAFTKQVTNQVARITGELNRLEQLLSAGMVDRRVLSEFRYAVDSARKTRWQVEKWLDGDSRELSTMITEERIHCITRMSNHLASELEVEAKQFAGLDALKNAMSKLDSALTRKA*

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