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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012995 Open in IMG/M |
| Scaffold ID | Ga0157361_1000210 Open in IMG/M |
| Source Dataset Name | Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29558 |
| Total Scaffold Genes | 30 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (80.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Brazil: Ribeir?o Preto, State of S?o Paulo | |||||||
| Coordinates | Lat. (o) | -21.168 | Long. (o) | -47.846 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017769 | Metagenome | 238 | Y |
| F017770 | Metagenome | 238 | Y |
| F025892 | Metagenome | 199 | Y |
| F032107 | Metagenome | 180 | Y |
| F074228 | Metagenome | 119 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0157361_10002101 | F017770 | N/A | KSVKRSSWMESSSNLSIGSIFMCQEVKGPLRLARAVPEVNEAIRVIGEEGPEGLDNGKGMSLALE* |
| Ga0157361_100021015 | F074228 | GAG | VTHIEVWDFSVRLGSDICISRVENPMETLSSSLCQMLNKEQLA* |
| Ga0157361_100021028 | F025892 | AGGA | MIYVLITWMPPQRLGRAERTVSPDESQKIELYIVSSILNLDWSNYLVEKRCIVMPGTQYTGHSLEIAVLVVLSLGSMISYFIRTVLTATMKRNALELAVSTQP* |
| Ga0157361_10002103 | F032107 | GGAG | MSWDDQVSAEKSRGLAFGVTSAPQAPLSTSLMPHGPNHGIAESSSQVEGGSAVAGTCDMTGDYDTLVIRDSDSLPQVSQSVISDIITYDVIYDCDLWNGEHHVTFLSSYFGYLENNAKVLALSILCIACFIQKYPIGSHPIEQFPLILGAGSII* |
| Ga0157361_10002104 | F017769 | N/A | MCSPFRSRGRESSRELERDNSMRELACNDPRGSRCPKTRTNLLLFTFLLLRGRRELRRCIPKDLSS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |