NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157361_1000328

Scaffold Ga0157361_1000328


Overview

Basic Information
Taxon OID3300012995 Open in IMG/M
Scaffold IDGa0157361_1000328 Open in IMG/M
Source Dataset NameFungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21175
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (65.38%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location
Location NameBrazil: Ribeir?o Preto, State of S?o Paulo
CoordinatesLat. (o)-21.168Long. (o)-47.846Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000383Metagenome1208Y
F008009Metagenome340Y
F015953Metagenome250Y
F017770Metagenome238Y

Sequences

Protein IDFamilyRBSSequence
Ga0157361_10003281F008009AGGAGMIKIVKGVELEFASIPIGVVTRIERDMIRKVVQQPTSWANLRIE*
Ga0157361_10003282F017770GAGMASSSDLGTNSVFICQEVKGLLGLAWAVLEVSGVIRVIDKETPKGLDNGKGVGLA*
Ga0157361_100032824F008009AGGAGGMTKTIKGIKVDFASVPIEMVTGMERDMIRKVVQQPISWVYLRMK*
Ga0157361_100032825F015953GAGMITMHLILKEVTLTIPNQIVNNSVSRAVAHSIGILDDDSYSSSLQKWTTEIAYMFLGEITLALEATTSVNRLEEAS*
Ga0157361_10003286F000383N/AVVLEPGITEDYVLLSKAGDSKERPFGVGFVMENYVYNFRDLACLVGGAVYVVHRYGARDALGVNTFYMDEVSIYEVAHSSGVQKRLNGMHLTGVCGADFYREDDRHSTGVKGIDGESFG*
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