NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157361_1000373

Scaffold Ga0157361_1000373


Overview

Basic Information
Taxon OID3300012995 Open in IMG/M
Scaffold IDGa0157361_1000373 Open in IMG/M
Source Dataset NameFungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19030
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (50.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location
Location NameBrazil: Ribeir?o Preto, State of S?o Paulo
CoordinatesLat. (o)-21.168Long. (o)-47.846Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004107Metagenome452Y
F018112Metagenome236Y
F018840Metagenome232Y
F058579Metagenome134Y
F093009Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0157361_10003731F093009N/ALEAVGVLGPGLTFSSSLSSSSEKEKSSGDAFLETSAAETLLEECLTVRQARERPLG*
Ga0157361_100037311F018840N/AMKIFQPPLSPPSDEEMNLLDYLPLTKRQRVWYLPQETPEARQRREELAREMGVLTVGGGSPCERCADFGILCIPQNLP*
Ga0157361_100037316F004107GAGLELDGSVSDGVNCRGFSAGENRGFTKVSTGGTEAGFWSTNGGRKDID*
Ga0157361_100037317F018112N/AMHLPERNFTGNDTTSEIILFEVPSNKRSSTGGVGVVGRECPRAKAESKKQCIDPESTSVRMGIGWRWSEAYTRGEMRDIQREFGSERADALRCIGLVVA*
Ga0157361_100037320F058579GGAMQCRREMYLAIRERRLRQQDKNVRAESDLLNDLGFNLCVAPWSLVVRLVVYFGVEKVAKTEVPES*
Ga0157361_10003739F058579GAGVQRQREMYLPIRERRLRRQDKDIRAESDLLNDLGFNLCVAPWSLVVRLVVYFGVEKVAKTEVPESRVKESSEQDGLRTR*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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