NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157361_1000684

Scaffold Ga0157361_1000684


Overview

Basic Information
Taxon OID3300012995 Open in IMG/M
Scaffold IDGa0157361_1000684 Open in IMG/M
Source Dataset NameFungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12360
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (53.85%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus → Agaricus bisporus var. burnettii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location
Location NameBrazil: Ribeir?o Preto, State of S?o Paulo
CoordinatesLat. (o)-21.168Long. (o)-47.846Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013848Metagenome267Y
F084935Metagenome111Y
F102227Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0157361_100068411F102227GAGGMDAPSPAGESATTAITNHMVYLTREGRAEHICFLLALRATETHVLPKTFKDVAKLPADSKKRWLESCLEELKSLKDRDVYEIVDLPKE*
Ga0157361_10006847F013848N/AMGHSICKGAEDPVGIRGFNREIISIPNRLASQSSPFYQLRQLESTKGGQGKLGPITC*
Ga0157361_10006848F084935GAGMTQGNYGHIETANSKVLLFMVAVGTVLIKHEIIDPKDRTTRTVISKLWPVYCVPGITMHLFSTGQLLQSGLSIEMDGSTFCDSSGDAALSALPNLWGSIQVVRTCIIKNNVPNPVSLVTRHPDYETIHC*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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