NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157361_1001667

Scaffold Ga0157361_1001667


Overview

Basic Information
Taxon OID3300012995 Open in IMG/M
Scaffold IDGa0157361_1001667 Open in IMG/M
Source Dataset NameFungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7408
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location
Location NameBrazil: Ribeir?o Preto, State of S?o Paulo
CoordinatesLat. (o)-21.168Long. (o)-47.846Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006878Metagenome362Y
F008009Metagenome340Y
F015953Metagenome250Y
F017770Metagenome238Y

Sequences

Protein IDFamilyRBSSequence
Ga0157361_10016675F006878AGGMGKPAAVGKDVSMCFHLAMATRTLGALCREKALSELSNESMVKNGSSRPGTQDDRLANKWKPAPTFSIGGLEKVLDTTFEREKVTTLR*
Ga0157361_10016676F017770AGTAGMASSSDLGTGSVFMCQEVKGPLSFAWAVPEVNGAIRAIGEETPKGLDNGKGVGLA*
Ga0157361_10016677F015953GAGVSTALLAAVRESVMITMHLTSKEVALTTPSRIANNSASRAVARPAGALDDDTCSPSLQKWTTETACMFLGGITLASVATTNVDRSEKAS*
Ga0157361_10016678F008009AGAAGGMTKSVEGIELEFASVPIGAVTGMERDLIRKVVQQPTSWAYLRVE*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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