NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157361_1002898

Scaffold Ga0157361_1002898


Overview

Basic Information
Taxon OID3300012995 Open in IMG/M
Scaffold IDGa0157361_1002898 Open in IMG/M
Source Dataset NameFungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5266
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Leucoagaricus → Leucoagaricus leucothites(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location
Location NameBrazil: Ribeir?o Preto, State of S?o Paulo
CoordinatesLat. (o)-21.168Long. (o)-47.846Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006011Metagenome383Y
F016234Metagenome248Y
F049333Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0157361_10028982F016234N/AVSKDYSKYTVIEGREKLCNVKDDDTSLEALGPARANQVSEKETSIFSRPLSNATKLVGIEDTVLDNIKLESPSNHLLNELAKGIEQNNRPKSLGSVIGWFARLRDNDRDRLLEVSRPVS*
Ga0157361_10028984F006011AGGVTLSSIKERQEQDVTVVDHISSQTKPKSRETRVNKSHNSRNILRVPRNLDHLGPVRVNRSAHYLVSFQRDSRGSIANKVPGRFLDKEDIIVVFLRLKKSIN*
Ga0157361_10028987F049333GGAGVVAVLASRDRESALNTTRAGVGTFWKGAEGLVEEGTLLLPLVFLLVTVVKGASSTVS*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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