NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157362_1017425

Scaffold Ga0157362_1017425


Overview

Basic Information
Taxon OID3300012998 Open in IMG/M
Scaffold IDGa0157362_1017425 Open in IMG/M
Source Dataset NameFungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4385
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location
Location NameBrazil: Ribeirao Preto, State of Sao Paulo
CoordinatesLat. (o)-21.166Long. (o)-47.848Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006878Metagenome362Y
F008009Metagenome340Y
F017770Metagenome238Y

Sequences

Protein IDFamilyRBSSequence
Ga0157362_10174252F006878AGGMGKLAAVGKNMSTCFYLAMATQTLGVLCREKVLSELPNGSMVKDDSSRSGIQGDRLANKGKPAPTFSIRELEKVLDTTFERKEVTTLR*
Ga0157362_10174253F017770AGTAGMAASSDLGIGSIFMYQEVKGPLSLAWAVPEVNGAIRVIDEETPKGLDNSKGMGLA*
Ga0157362_10174255F008009AGGAGGMTESVKGVKLELVSAFIGAITGMERDMIRKVIQQPIS*
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