NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157362_1029679

Scaffold Ga0157362_1029679


Overview

Basic Information
Taxon OID3300012998 Open in IMG/M
Scaffold IDGa0157362_1029679 Open in IMG/M
Source Dataset NameFungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3350
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Strophariaceae → Galerina → Galerina marginata → Galerina marginata CBS 339.88(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location
Location NameBrazil: Ribeirao Preto, State of Sao Paulo
CoordinatesLat. (o)-21.166Long. (o)-47.848Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006537Metagenome370Y
F074227Metagenome119Y
F093006Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0157362_10296792F006537GGAGGMDVDTVRKTCSLPLRGCYHCGEANYLVKDCPYRLDVRRLTAEQKEELIEDLMALKDAVEEEKVCSALEKDFV*
Ga0157362_10296794F093006N/ALIVRRPFQSVDGVYFCIDWKELTPKLLFEVDPGLNWKNAGVRLLAKEVLGPLHSTSILEEGEGPEDFFLITGELIQSQA*
Ga0157362_10296795F074227N/AVVGGSFQSIDRVHFCIHREEVNPELLFKVSSGLHGENASVYFLTKDILRPLGSMTTLEKGESPENFFLFIMELFWD*
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Institute for Fundamental Biomedical Research
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