NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157360_1000599

Scaffold Ga0157360_1000599


Overview

Basic Information
Taxon OID3300013000 Open in IMG/M
Scaffold IDGa0157360_1000599 Open in IMG/M
Source Dataset NameFungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13667
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location
Location NameBrazil: Ribeir?o Preto, State of S?o Paulo
CoordinatesLat. (o)-21.165Long. (o)-47.848Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002577Metagenome546Y
F003619Metagenome476Y
F019419Metagenome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0157360_100059912F003619AGAAGVNVSYPIFYSFLRQDAAVTWITFYGVVGLKSLANHQLRLYYTHKIWCGGTDEGLIECGKAHKWFTDYSTSELVIVCKGGNLRDTMQGKSRLNLQLF*
Ga0157360_10005993F002577GAGLSKFHHYCPEIHITSVGDQGLEAIQIVIHCLISLVVGGPFQSIDRVCFCIYREEVQLELLFEVFPGLDGENTSVRFLMKYIFRPLGGTTSFEERESPENLFLLVMELLWG*
Ga0157360_10005994F019419N/AMGTPIDRVTGGGGARDNLATGNGGGQAEMVLSNAEGAECDTDWKASFARCTWSILRAALYYTSGSVSAGHP*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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