NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157360_1000845

Scaffold Ga0157360_1000845


Overview

Basic Information
Taxon OID3300013000 Open in IMG/M
Scaffold IDGa0157360_1000845 Open in IMG/M
Source Dataset NameFungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11510
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (44.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location
Location NameBrazil: Ribeir?o Preto, State of S?o Paulo
CoordinatesLat. (o)-21.165Long. (o)-47.848Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004107Metagenome452Y
F016095Metagenome249Y
F032494Metagenome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0157360_10008451F016095AGGAGMKRTCTRMRRLKTTISVYDPSKHSRSEHCARKGHQSRVSRCPGGAPYHHYGLARIGNSEVFFVSLSLLSFCFVIIIKYSRAQEGNKASYSHHHLSLLL*
Ga0157360_10008455F004107GAGGVLDRNVSDRMNCRGFSAGDNRGFTKVSTEGTEARLWSRDSSRKDIDLETQSINGL*
Ga0157360_10008459F032494N/AMIARETAEQYKYPSFAMETAFEYKYQIATETVEQNTSKQVSAKETVLWNVYKYSRKFFFFEAE*
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