Scaffold Ga0157360_1014990

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0157360_1014990

Scaffold Ga0157360_1014990

Overview

Basic Information
Taxon OID	3300013000 Open in IMG/M
Scaffold ID	Ga0157360_1014990 Open in IMG/M
Source Dataset Name	Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2516
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Tricholomataceae → Tricholoma → Tricholoma matsutake	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location
Location Name	Brazil: Ribeir?o Preto, State of S?o Paulo
Coordinates	Lat. (^o)	-21.165	Long. (^o)	-47.848	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000709	Metagenome	925	Y
F029614	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157360_10149901	F029614	N/A	LVVRGAFQSINSIRFCVDRKELTLKLLFEVGPRLDRKNAGVRLLAKEVLGPPRGTSVLEKGEGPKDFLLIAAELLRSQA*
Ga0157360_10149902	F000709	N/A	MVLEPGVAEDHALLPEVGDGEEHPFGVGLITEDYIHHFGDLPCFVRGAVYVEHRYGTRDALDTDTFRTDKILVYEVASGSRVQKRFDGMHLAGVGGTDLNRQDDRRSAGVEGVGEESFGESFLPFGSPRQGCPDWSGGGERECVYRFTNFCIDFFYV*

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