Scaffold Ga0164293

Basic Information
Taxon OID	3300013004 Open in IMG/M
Scaffold ID	Ga0164293_10000004 Open in IMG/M
Source Dataset Name	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300013004 Open in IMG/M

Scaffold ID

Ga0164293_10000004 Open in IMG/M

Source Dataset Name

Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	192908
Total Scaffold Genes	195 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	56 (28.72%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

192908

Total Scaffold Genes

195 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

56 (28.72%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (22.22%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.099	Long. (^o)	-89.405	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.099

Long. (^o)

-89.405

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007255	Metagenome / Metatranscriptome	354	Y
F009382	Metagenome / Metatranscriptome	318	Y
F009453	Metagenome / Metatranscriptome	317	Y
F010014	Metagenome	309	Y
F014361	Metagenome / Metatranscriptome	263	Y
F015306	Metagenome	255	Y
F018866	Metagenome	232	Y
F028091	Metagenome / Metatranscriptome	192	Y
F046855	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_10000004105	F009453	N/A	MATAGTLLSDLDGKAPVFSNKDDDLVNKILADMNIPSSSNPVMNAPPPPSGNGSRMIQSPNPNTTYPMATDPATATAHMIGKDYPSAADFANLMHSPSYGHGGSQYASVGQPMAAPPVLLEPTKGNIYSDIMSQMKQPLLVAIIIFLVSLPIINVLIGHYLPSLLRLSGELTTAGMAVKSLVGGFLFWFIQKILVPLMVV*
Ga0164293_10000004120	F015306	N/A	MNQSIHSTTPQFEKKKVARFHRLDNEHILAIESLYKTHPFLKDRVEIHMPFHRAKPTFQSGTVWMWPKFDKRPVGYLIFMDGFAPCIWYPERQEGMTFRWLLPPTFCQKGATVCLANILAGESLLQIEDLLVHQGTDLWSHQPFSERWLSLLTFWNSLPPDQPLLAFQPRLVQPIALSDWHLHYNPAIYWIIQPDHMRQARWYWKDVITVPEHRAVEFIAPILKRSKEMAQLLCAYCIPYAKMVLPDTYSLLSQEGNSLGMASIPTLLLSLELRGLFSDKTNASVRKTEGIPVEVEWNAAFQKYQVVRVLPQETPITTEAFFHHMRS*
Ga0164293_10000004145	F009382	N/A	MAELHQIGFSQNTYPNLFTAPEFGTEYLAARNAYVPPVQDVYPARDDRYPAYAGKMQDGRLVTDYRPKCSKNIRPNDQYYTKAWMVHHADEMMDESRRRQVEWSGASLPLANTVPPPAQIVHSNPFYSEMSATNLKYGIGMERADATAPMLFGTFQYEPTMSEIRNNRKNIDLTSRQEGGRNSVRGVF*
Ga0164293_10000004153	F046855	N/A	MSLPAAFAGQQASTLLAISPIEGFLQIFNNNPYFIGLMMLILNLGGRFISLEVTKKQEQFLQHPWVRRILIFTVLFVATRNIWVAFWSTLTFVLFLGYLFNENSSLCIFGAGGSPGSTCADGPKPGEEMTPEEKEILHRLSAKAQRYQTADQTKKNMNRPDQEALEKSLRYVPIGSTMNEDGDPINDDVLHTDIYAANLSLLRR*
Ga0164293_10000004154	F028091	N/A	MKTPTWPDFLSFQHGSDGVFRAVVVLLASLFLINYSSIFEEQYSHKLTSLYIYPWWRILVVLLVLTSALWCPRVGIIIAFIVFFYLSDMNTLITPFTNY*
Ga0164293_10000004162	F010014	AGAAGG	MAQPVFPDQHTVSSYNAFPHPQFITRTRRESNTFDSINARQFEHWQTDGKFGTNNRPDINKQAPFYDMQPSDSRMNSRSYRSQPRFDADSSRGAQNPYFDKYSVTDDSRNMTRELKASVYEDKNTGYVEESNKLLQRNFDNRWLNPTVAIQQATVAEELRPKMDDIRLFYHNKPAD*
Ga0164293_10000004164	F018866	N/A	MDIHRHKTQKKSAMESEHPVTDETFKILLEDSAREAYMRPWHRIERGLRLNRLRIFVEDVAPQYSMTREEKDNFFIYLQKALDKKLLNTLKVVLYNQETQRITTIKGLELSRLPDGSIKWAFTTKKPRVEGVGTRKKKKDDVFSVSTDVPEKLAKIEETNM*
Ga0164293_1000000469	F007255	N/A	MTPAWFPWIFVGGIVFIILSFISAKYKEKEYRPIQYLQDFISGSILIAFTGVLIPDIFPVLSLPSGMPQMTTDEMDLQVGPPRLIGR*
Ga0164293_1000000489	F014361	AGAAG	MSVLNAFTTQMVHFFDELCNTFPEEKDLKMATEGIKGAKKINPRLILDLFVEHVYKSCSTAIYERNMHVIRRHMQDTVTTQFNDMLAALSIFDKHWDTMGTKNQDVIWQYLKVLCHLSEKAAHAI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0164293_10000004

Overview

Ecosystem & Geography

Associated Families

Sequences