Scaffold Ga0164293

Basic Information
Taxon OID	3300013004 Open in IMG/M
Scaffold ID	Ga0164293_10000489 Open in IMG/M
Source Dataset Name	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300013004 Open in IMG/M

Scaffold ID

Ga0164293_10000489 Open in IMG/M

Source Dataset Name

Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	31608
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (21.57%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

31608

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (21.57%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.099	Long. (^o)	-89.405	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.099

Long. (^o)

-89.405

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F038642	Metagenome	165	N
F063618	Metagenome	129	N
F065741	Metagenome	127	N
F085402	Metagenome	111	Y
F099218	Metagenome	103	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_100004892	F065741	N/A	MAITINTEPNDVAPVYSDVSYVVTSTNYAQANFKFIAVIKNASGTTIAKLKAPIFHGTTDKGVFNISRILQNYVTYDFTQNLTAISKCNNSYLAYSVEFGEEYGGTEYLNLASDTGKYVWNGLFNLYGSETPDTYKINVTPNSAKFLTRVRPRIVTREQYDYLYFLLLGFNIEPKVIAYNAAGSVIATSYLKLPWTPSTADTSQFMVRFGAGVVQLNALTAGELTSGTPGSVVPVGTAYYTIQFTQTIGGNFSEIYRFDVVEECSKYVPQYLYFLNPLGGFESVRCSMVSRDKYSVSRKQFKRNNYTLTGNTFAYDKTKHGMTSYATEKTKQVVLNTNWLNEVEFEWLQDLIASPVVFLGDIPVNITDTNYEVFDYIDGPNNLQITVEYTEPERLQNA*
Ga0164293_1000048931	F099218	N/A	MMDIVNLLFDVEEGNASALDAFCHLTRLEKQIKAAKEQIQSQAINEAQMYGKTFQHMGFEIQCRSGAGRWKFDHLDEWSAAKMKMNTIEDLAKWAYKSEEKGVLPVTDDGDIIQPAVYVAGSDTIALKEIGHAE*
Ga0164293_1000048937	F085402	AGGAG	VATEKQTETGQTHEVSEQTQVSKTIPRTRKMKLKNYFQPTPKRFRVLGDSIAAASLFVAGLNLDHPKLMLISGVCGAVGKFVTNFFAEDEKK*
Ga0164293_1000048945	F038642	N/A	MLYITKAGTPELIITGREKVTVSPVYYLLVFESEMSQEQKAFIVTDTSTAPNRYQLFSFVEGSSTAKTLAVGTHYWALYAQTSPSNTNPLLASQEIDRGLAYVTASHTAFNDHEVNTTIKQHHIG*
Ga0164293_100004895	F063618	N/A	MKLPKNWNEISIAQFQELQLLTEPSFDNQLKTLSILSNKKLDTIEEMRIVDITAALAKLAFMAELPTAKNVGSFRIGNTLYKFAANQHHLQAHQFIMVQDLFAEKDKWVQNLHMIMAALCVPYRIFPPKRKEVKTDDFEKIAAQFRERMPISFAYAYTLFFSLCLPQLLEATQVYLEQEVEKLKKIADEKTDQPSVG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0164293_10000489

Overview

Ecosystem & Geography

Associated Families

Sequences