Scaffold Ga0164293

Basic Information
Taxon OID	3300013004 Open in IMG/M
Scaffold ID	Ga0164293_10001314 Open in IMG/M
Source Dataset Name	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300013004 Open in IMG/M

Scaffold ID

Ga0164293_10001314 Open in IMG/M

Source Dataset Name

Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20636
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (24.32%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (9.09%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

20636

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (24.32%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (9.09%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.099	Long. (^o)	-89.405	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.099

Long. (^o)

-89.405

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006018	Metagenome / Metatranscriptome	383	Y
F007859	Metagenome / Metatranscriptome	343	Y
F008688	Metagenome / Metatranscriptome	329	N
F009135	Metagenome / Metatranscriptome	322	Y
F010081	Metagenome / Metatranscriptome	308	Y
F013524	Metagenome / Metatranscriptome	270	Y
F014838	Metagenome / Metatranscriptome	259	Y
F019476	Metagenome / Metatranscriptome	229	N
F020529	Metagenome / Metatranscriptome	223	Y
F022636	Metagenome / Metatranscriptome	213	N
F099167	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1000131416	F010081	N/A	MKEQIDAIIKKHCLKMQEIDKTKSIPMTVKDLDHIVYDMYRELYGLRDIRASNYNLNSFTADDKKGHCC*
Ga0164293_1000131417	F007859	N/A	MKKLLIAALLCTGCTSGMYLRYSYNRALENLPPCSRVHAINNDYITYSMIENSTNSVYVVHTNYYRAYYNCEGKIINTTKN*
Ga0164293_1000131419	F008688	N/A	MNRFNKIMLGSLAAILLTAMTIEPPKIKVYLITSYRGNDLTIEKVYLKKENAEKYRDMYKESHNYSVEERELTE*
Ga0164293_1000131420	F013524	N/A	MKTNQEVISRLRQFTSYNCNNLLDAKLCEDIRYLCDEVERFGREMVRVNDHMDADHITIQRYKNKLEKCQLKLSNYEPF*
Ga0164293_1000131421	F009135	N/A	MSKPKYYLTVNLPPNFDDLDAEVIKKELMTYINSRNQWGALYGPKSSKKGITVEKVIYRTNED*
Ga0164293_1000131424	F019476	N/A	MNNINNKTKSARIILDIEWEAVDGSDLPSLWDWKRIKMPMDLTKVKYIGIQTPNGPENVTNWMGN*
Ga0164293_1000131426	F099167	N/A	MNLVMNIKILNRTIDIAKAMCPLNLEHRCSHIAFLIRCGKIVHIGTNSCKSHPKTLEYDYKNHQLVGLHAELSVCMKSGKEDLKDFKMVVLRVDRTGKLNNSKPCCGCQSVIKQFNVDEVWYSNSYGQIVKN*
Ga0164293_1000131428	F006018	N/A	MKKYSIKTNDIGMCMSVGCDFYQTCSHNSVNMFYKTKRKFDPVLDESLCLSYGSGKNTKDYVDNCYPNVLKKIYESGY*
Ga0164293_1000131432	F020529	AGGA	MFSNKNIVKYSAKYFVLTTLGAYIFNLSASMINQKSDVANLAGSALFAGLFISTLVILKSDVTKLVKKLEENKNKENE*
Ga0164293_1000131433	F022636	N/A	MSTYRRATLQDLAKLGYVPNTQKYSEHIAFAKKYYPPEATTMVMVVHSEYNDCTYDNSFQYVIVYDKDGNELPPLKKTAKECRANWNIDNLPIPNTSSGHYGASESDEPLEDVVIPLTIDIPELYIKEN*
Ga0164293_1000131434	F014838	N/A	MKESLKKIEELKNQLNTVKSELQKEFKAELKKIFVDNPTLDSVEMYINNHEFNDGGATSFYIGYEDLKIVVEGEEVEREWDNATKDYKANPVLESLIELFGDVQCIHEDLYGDEYEHLSIIREEVLKF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0164293_10001314

Overview

Ecosystem & Geography

Associated Families

Sequences