NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164293_10002211

Scaffold Ga0164293_10002211


Overview

Basic Information
Taxon OID3300013004 Open in IMG/M
Scaffold IDGa0164293_10002211 Open in IMG/M
Source Dataset NameEutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16499
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (75.76%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.099Long. (o)-89.405Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025215Metagenome202Y
F030660Metagenome184Y
F043220Metagenome156Y
F073073Metagenome / Metatranscriptome120Y
F085116Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0164293_1000221125F073073N/AMDKFMISSDEKMSTGFAKSIILNDGTSKYSGRLHWDSFDGYSMTWDTQQPPEADRPEFEYVLDCITDLER*
Ga0164293_1000221126F025215AGGAMKLKVHHPNGDVIAEVYDYAAGALLMSLYGDGSYITYKGASVWEEGTDGEGAESYDTVGMVIDSRLISMGVQVDG*
Ga0164293_1000221129F043220GAGMSANNVDYANDIILALTRDELETVRESLRQFSIINTRNGFEARAKNADNLRDKIVNIILDSVQRKIDKEQELV*
Ga0164293_1000221131F030660N/AMSPDDIAFDFMTEQEIAEIIATEDIFQVDLSDIDNLLEDVATDSDYE*
Ga0164293_100022116F085116AGGAGMSEIVNNTFWAVFYGSTLGTLTVYLITSLLDEYRSNKNRKEIELLMEEWEDLED*
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