Scaffold Ga0164293

Basic Information
Taxon OID	3300013004 Open in IMG/M
Scaffold ID	Ga0164293_10003125 Open in IMG/M
Source Dataset Name	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300013004 Open in IMG/M

Scaffold ID

Ga0164293_10003125 Open in IMG/M

Source Dataset Name

Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14121
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (78.12%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

14121

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (78.12%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.099	Long. (^o)	-89.405	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.099

Long. (^o)

-89.405

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009529	Metagenome / Metatranscriptome	316	Y
F020909	Metagenome	221	Y
F024097	Metagenome / Metatranscriptome	207	N
F025466	Metagenome / Metatranscriptome	201	Y
F058137	Metagenome	135	Y
F096878	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1000312513	F058137	N/A	MVGKKVRSVRVSDQLWARAMAKAKSEGKSVSEVIVDFLKEYIK*
Ga0164293_1000312514	F020909	AGG	MITKRGKQVRAIGIVFLVYVLFHISANLWWVGIDSPNAEFLGWCWGSMSECVVL*
Ga0164293_1000312516	F096878	GAG	VGLLINRDPLFSVHNSLNGDVAIYLEERDAALDLVEDVLAAVPMADLEAIENLMITDLKSSDAARMMDKARSAVPDLAIKLASISESEALTLAEQLITAVKYARAMRSQPLTTKLELVK*
Ga0164293_1000312517	F024097	GGAG	LANPNGRKGALFETSVMKWLRDRGVSAERLTKAGSKDEGDIVCVVANKTYIFELKNRKAITLPAFWDEAITEAKNYAVARGLKQTPPAYVIIKRRNAGIEKSWVVQDLEQWLGTRD*
Ga0164293_1000312531	F009529	AGGAG	MNCTICDKATKNEGACLTCELKVKACLVELPALQYEAGNHLAPARTGSGAVSSERSIGINVNALDFSMATDLLHILHGYEVPIRIGRGLTPPAYIDKEPSIEAEVDATCSFHLAHLDYTLLQPWAVDFASDVYGLHAKGRAAAKKFSEQARRIPCPTDDCKRFVVIDVENLSDEVSCFGCKQSWTVARLVKLAMSNPNRKFFLDVEAISLWLKISQREIYRIVKRNDIEKRGSLYNFGDILKVVQI*
Ga0164293_100031256	F025466	AGGAG	MFDAVKIQAIVMTYLRAGAAAVLALYLANPNQPLKNYLFAGVAAVAGPVMKALDPKATEFGKGSK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0164293_10003125

Overview

Ecosystem & Geography

Associated Families

Sequences