NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164293_10005179

Scaffold Ga0164293_10005179


Overview

Basic Information
Taxon OID3300013004 Open in IMG/M
Scaffold IDGa0164293_10005179 Open in IMG/M
Source Dataset NameEutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11106
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (90.62%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Associated Families11

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.099Long. (o)-89.405Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F000852Metagenome / Metatranscriptome860Y
F001507Metagenome / Metatranscriptome681Y
F002071Metagenome / Metatranscriptome596Y
F005531Metagenome / Metatranscriptome397Y
F006744Metagenome / Metatranscriptome365Y
F007470Metagenome / Metatranscriptome350Y
F008132Metagenome / Metatranscriptome338Y
F011299Metagenome / Metatranscriptome292Y
F061860Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0164293_1000517911F011299AGGMMTRKHFEATAEILKYASNKTHPALFSKMVNDFSLMFAKENPNFNVNKFHEACNYHVPKLTTH*
Ga0164293_1000517914F002071AGGAGMEIGQTYTTTTSGITGIIKAVDNHPSGVNRILLDVNGKERWTSAPAN*
Ga0164293_1000517920F000311GAGGMYFELTAPNQLALQRAFWDAEVTGLDPQMIDSLTFNIGTGSIEKVSRIRDKFNLTETYTSDYEPTGYTGR*
Ga0164293_1000517921F007470GGAGMDYQDGFEDGVKFAREVIVANIRLWAESSDDGQVYDEIADTIEFGTVDYDL*
Ga0164293_1000517923F000450AGGCGGMGDRANFVFVQDSGETIVLYGHWAGHDMLKNLADAVVNARRRWNDDSYATRIATSRMIGDQWNMETGWGLSVNQIMDNEHKIPVINWKDQTFSLHEEDDFRNQANKVKGMKNEALFTMDLSAFCEKYSDELLPV*
Ga0164293_1000517925F001507AGGTGGMNTEYKPYTIDELVTTIYEDNFSHFDFMDNMNGGDCDCNLHTAMDLIVKYWGE*
Ga0164293_1000517928F061860AGAAGGMIPTTELEPYLQKQVDNGLPGTDILHGALKNMMLDTEQILNPLLENSNELGSDEEYEDTVQRLYSEGYMDALTEVYALTYNLAFAINERTKKNAN*
Ga0164293_100051793F008132AGAAGMMTKWDTIQADVSDAYAHLQEEEMYEQLMAEEEDVFGFTKAIQIDHLTDEQVDEIFDMFGDK*
Ga0164293_1000517931F000852AGGAGMTTKREYLVSKGITVGRRGRFSGAAKVALAEAEKAGIKFSAEKPATTSK*
Ga0164293_100051794F005531GGAGMIITYSLWQGSQLLSVNNKANKPEEILAIIEELNKLGKGFTFNVREVNTNE*
Ga0164293_100051798F006744AGGMNLEEFKAHVLATRQQSKSEALSVLSATISTTTGKEN*
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