NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0164293_10010411

Scaffold Ga0164293_10010411


Overview

Basic Information
Taxon OID3300013004 Open in IMG/M
Scaffold IDGa0164293_10010411 Open in IMG/M
Source Dataset NameEutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7808
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.099Long. (o)-89.405Alt. (m)Depth (m)7
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001477Metagenome / Metatranscriptome687Y
F003212Metagenome / Metatranscriptome500Y
F003863Metagenome464Y
F017972Metagenome237Y
F027417Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0164293_1001041110F001477AGGAGGMSNIYTIHPRKSELILLYEVVDESGRAEWGGANAEQAMQWLTLAPDNARLLVSAWDSDEEDAHLVGQTIDITEIVQQARQVGR*
Ga0164293_1001041112F003863GGAGGMESKEVSGKQAIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWIINPDSRLTVGVHTRANAVPEVAGRTDYEGADESYDGGEA*
Ga0164293_1001041113F017972GGAGGVRTRHLQLVSQEHSVTTTTRSIVSSPYGPVSPGSTTLLAQETLRANQEARLLELLSSLESVVENLNYKSFTAYDTLVIATEGVRVALLGTQTDEAGTNADRS*
Ga0164293_100104116F027417AGGAGGMIYDYRVTFVTDYLTITTNVCLELNDTTGNLSDEAYGRATVKGMNNIEDEIGKIDETIINDITVTLILDDEEIELNEG*
Ga0164293_100104118F003212GGAGGMKDRYLVTLEIETYDGDPREWDWEKLSTGEDVIKIIETQWKGRVLPTNEGESNE*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.