Scaffold Ga0164293

Basic Information
Taxon OID	3300013004 Open in IMG/M
Scaffold ID	Ga0164293_10011289 Open in IMG/M
Source Dataset Name	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300013004 Open in IMG/M

Scaffold ID

Ga0164293_10011289 Open in IMG/M

Source Dataset Name

Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7493
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (63.64%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7493

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (63.64%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.099	Long. (^o)	-89.405	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.099

Long. (^o)

-89.405

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010247	Metagenome / Metatranscriptome	306	Y
F013082	Metagenome	274	Y
F013525	Metagenome / Metatranscriptome	270	Y
F019968	Metagenome / Metatranscriptome	226	Y
F024771	Metagenome	204	N
F032656	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_1001128910	F013525	AGGA	MNSIAQELSSKNPDEIKAELDSISEEMSEALYEFRRCEMFLKITFSQIALTYKMEKNCSVAEADKLAFADSKYATIVEGLLYAEKKYTLLKSKYANLMVFCDLWRSFMANNRELSR*
Ga0164293_1001128913	F010247	N/A	VFKTISIFKQKGETMNVQGVIKYVYDNRLGKDGMANKFPNFKFKVGEQEIVLWSSILHPAIAKGKTVSVTCGASKKNGSLFVLTKEDKSPMIQELPTGAKPDTSFNPDELEKELQQVAKDFDADLIVEPKKSINKDEYMFVMALAKSAIESGKINVTKEELDILIKDLKFLFQMNFHN*
Ga0164293_1001128916	F013082	AGGAG	MTTVKEEINRLFLESQKNPSIVANEAPYYFDLCSVEDKTITLNEFYKQFPYYNPDRDCDYWKKQHERWENIWKQNTI*
Ga0164293_1001128922	F019968	N/A	GVICSMSYYEMKLMTAVLTRILLDNEVRGEHTKKRITTLISKLNNMLTKQC*
Ga0164293_100112898	F032656	GAG	MNFYLVTYAISFVKVNDENIKEDIAHVRFFDSQNFANSHSFLASLKQVKKLRITSVEWDLEECNWYDYYEDISNTIH*
Ga0164293_100112899	F024771	AGTAG	MNDKKHIENFNNESYEVRSQNYKNYSEDRFESYCRMRSYCYTKLSLNSVTPSQSFADSIIPMFQRLPLFYKLQPDYFIYKSKEEHEKSDNKEKYQWFVELKNATYEQGKTLAKIKVRDLKRYTYFEQGYTNQWTRFTICFPLADKIIFKSVDQILKLLPKSQLKSFPNDNIEYFEVQLN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0164293_10011289

Overview

Ecosystem & Geography

Associated Families

Sequences