NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164293_10022058

Scaffold Ga0164293_10022058


Overview

Basic Information
Taxon OID3300013004 Open in IMG/M
Scaffold IDGa0164293_10022058 Open in IMG/M
Source Dataset NameEutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5315
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.88%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.099Long. (o)-89.405Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024535Metagenome205Y
F033362Metagenome177Y
F037637Metagenome167Y
F104496Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0164293_100220581F033362N/AYMKMIPINQFIEIIKKQGAVGVLALWLTYTHFEVQDVKERLYNCLDKNEYYNRKPIEEKQPQAPIIKSDTVAVLENKSRKLAKK*
Ga0164293_100220583F024535N/AMAKKKITIDTDNVDVNLEKDGTNIKLDIDSKNVDIHVLKGEINKEFKLDSKNIDIEISKTAEGLEVKVESKGGIWKLIAKRVVKFILRRFKIGK*
Ga0164293_100220584F104496N/AMKKRTGILINSIIILLGASYDSYLMLGAGVICLSLVLISKTKKHELKN*
Ga0164293_100220586F037637N/AMNWSSKQKRTKQVNVSFEWTNKSDLIAILSDLRELIGSGVETYHNQKKSVEMEDKWHEVEFSQKFVDKIHESTESDINGELKLVIKSNF*
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