NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164293_10057674

Scaffold Ga0164293_10057674


Overview

Basic Information
Taxon OID3300013004 Open in IMG/M
Scaffold IDGa0164293_10057674 Open in IMG/M
Source Dataset NameEutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3101
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.099Long. (o)-89.405Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F000808Metagenome / Metatranscriptome882Y
F003393Metagenome / Metatranscriptome489Y
F018352Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0164293_1005767410F003393AGGAGMETIENDDIILVMDYVKVDILTAGQLEVDDLILVDGEVVSIVEIISLPDGYTLEIINDFGERETIEVGEYDQFDLMMLQ*
Ga0164293_100576743F000447AGGMGFIEIFRLDENGAGWVDLSEATPSELLDLEIGLFQEGAL*
Ga0164293_100576747F018352GGAMGKFKESITTILTCSWCYGQGWQFVGNDVDYDVWACECNPYNIPADEIQEYHQLFKTKENA*
Ga0164293_100576748F000808AGGAGMEYNYSLTTSYDGELKHTLRVNDMLEAADAWSKCVDFGDAKEYATYNLSDPIGKMYTKTFYRNGEVVIK*
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