NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0164293_10104482

Scaffold Ga0164293_10104482


Overview

Basic Information
Taxon OID3300013004 Open in IMG/M
Scaffold IDGa0164293_10104482 Open in IMG/M
Source Dataset NameEutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2169
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.099Long. (o)-89.405Alt. (m)Depth (m)7
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007751Metagenome / Metatranscriptome345Y
F009333Metagenome / Metatranscriptome319Y
F010084Metagenome308Y
F010836Metagenome / Metatranscriptome298Y

Sequences

Protein IDFamilyRBSSequence
Ga0164293_101044821F010084N/ANNIKTKIGVSSIDGVGVIAIRDIKQYDEVFPIWNNETGIYIIPSDRLDEIPNEVIELLDMYFINDECGYKVIRLFKGLNFLFHGFSYCNSAWPNENNVNITNNGIAMRDIKAGEEILEWYNENIYKH*
Ga0164293_101044823F009333N/AMSYLRFDRHQKFNREMMDYHSETLRAVEDFHMSRNESWFNDVYNMLCGVWDGYLYTDLLESAKQLGLPTHITNRIEYTINFIQK*
Ga0164293_101044825F010836N/AMATSNFHNVNASAIFAVQLENDFDYEDLVDNLKSELNNDSDYVDYGKADHNELRSFPSRTLGSIRKYHQYKDFYVEVCVTPVIRSGYYSGVNLDWNVDYLINGDVSYDSPDFYIDDIAYCGNLSKSKATQYAKLAEKKAEKLKNQIVEKLESLYNDYSEKYGVTAVFSNGETIYHKL*
Ga0164293_101044826F007751N/AMNQIEELKSVIGKDVSQNQSPTCRARLISVGKANCTFESVPSPYNKFPKSEFVGVKYKVPNWIAWNSFFY*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.