NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164293_10111205

Scaffold Ga0164293_10111205


Overview

Basic Information
Taxon OID3300013004 Open in IMG/M
Scaffold IDGa0164293_10111205 Open in IMG/M
Source Dataset NameEutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2087
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.099Long. (o)-89.405Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F000714Metagenome / Metatranscriptome924Y
F002207Metagenome / Metatranscriptome583Y

Sequences

Protein IDFamilyRBSSequence
Ga0164293_101112051F002207GAGGMIKDRLNKPFTLAQETFGMGDISTMGFPTKIEQVTYSNPVFAFHNIHSYKDDGITDEEYACQPNRGDIDIKNDPDWFRKSVEFAKTQKDWYSWNNSNWGTK
Ga0164293_101112052F000450GGCGGMGDRANFGFVQPNGNTIVLYGHWAGHQMLGKLADAVIAARPRWNDSSYATRIAISQLIGDQWNMETGWGLQVNERSDNEHKIAIVDWEQQTFSLHEEDDFRDQTNKVRGMKNEAVFVMDLTAFCEKYALENILVN*
Ga0164293_101112055F000311GAGGMYFELKAPNQLALQRAYWEAEVIGLDPELNSQPLTFNIGTGSIEKVSRIRDKYNLVESYTSDYEPTGYVRR*
Ga0164293_101112056F000714N/ADTYNPNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNARQNSKHNAVLQGKIDAVKEIICEAYADSQDQDTLREIAEALDIELIKEIQFTASVEVSGTYSFNVLENDYDMDLDSVITDALFADSNDGNVQVDDTEVCNVREA*
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